Study: Farmers could one day grow “super-pangenome” watermelons

Researchers at the Boyce Thompson Institute have constructed the perfect watermelon—returning “lost” genes from the domesticated fruit’s wild relatives that improve both taste and resilience during the growing process.

watermelon_AdobeStock_7425002.png

Adobe Stock

Could farmers soon be growing and harvesting the perfect watermelon? It is no secret — delivering juicy, delicious “summer smiles” is no easy feat, and producing perfect watermelons from season to season is exceptionally challenging. According to a recent study published in the Plant Biotechnology Journal, watermelon growers may soon get a huge assist from science.

Researchers at the Boyce Thompson Institute recently constructed what they call a “super-pangenome” watermelon—combining the genome of the domesticated fruit and returning “lost” genes from its wild relatives. The researchers say the combination improves the fruit’s taste as well as its resilience during the growing process.

“The super-pangenome provides a valuable genetic toolkit for breeders and researchers to improve cultivated watermelon,” said Professor Zhangjun Fei, the study’s lead author. “By understanding the genetic makeup and evolutionary patterns of watermelons, we can develop varieties with enhanced yield, increased disease resistance, and improved adaptability. Our findings [...] also present significant implications for breeding and disease resistance.”

Genes from wild watermelon varieties that researchers were able to isolate within the super-pangenome control things like sweetness, flesh color, and rind thickness that were lost over centuries of domestication. One particularly exciting discovery was their ability to isolate the “tandem duplication of the sugar transporter gene ClTST2 that enhances sugar accumulation and fruit sweetness in cultivated watermelon.”

To create this super-pangenome watermelon, scientists referenced genes from 547 watermelon types spanning four species—cultivated watermelon (Citrullus lanatus), and its wild relatives: C. mucosospermus, C. amarus, and C. colocynthis.

“These beneficial genes could be reintroduced into modern cultivars to breed more resilient watermelon varieties,” Fei said. “Our findings not only provide insights into the evolutionary journey of watermelons but also present significant implications for breeding and disease resistance.”

The Boyce Thompson Institute study was supported by grants from the USDA National Institute of Food and Agriculture Specialty Crop Research Initiative and the U.S. National Science Foundation.

To read the full study, click the image below:

Behind the Rind: New Genomic Insights into Watermelon Evolution, Quality, and Resilience
Related Stories
Wholesale egg prices decreased by 64% from their peak in late 2024, while retail prices have dropped by 27%, according to a recent USDA update.
Liam Wade, a North Pole High School senior and the 2025-2026 Alaska FFA State Vice President, isn’t just dreaming about farming in one of the country’s most extreme environments — he’s doing it.
These produce staples last longer and are incredibly versatile, whether cooking from scratch, planning meals, or building a more budget-friendly kitchen routine. These are six fruits and vegetables that stay fresh for weeks.
While trying to find the sweetest watermelon is always difficult, experts do have a few recommendations.
The brisket comes from the cattle’s breast, so it can be tougher because it is used for movement. An ideal cut for cooking low and slow on the barbecue or in a slow-cooker.
Memorial Day is a day to remember and honor military personnel who died while serving in the armed forces. We wanted to share some songs that honor this day and pay tribute to those soldiers.

Marion is a digital content manager for RFD News and FarmHER + RanchHER. She started working for Rural Media Group in May 2022, bringing a decade of digital experience in broadcast media and some cooking experience to the team.

LATEST STORIES BY THIS AUTHOR:

Mary-Thomas Hart, with the National Cattlemen’s Beef Association, discusses the latest WOTUS developments and their implications for agriculture.
Earlier this year, the BLM moved to rescind the Public Lands Rule from the Biden Administration. Interior Secretary Doug Bergum says overturning the rule will protect the American way of life and give rural communities a stronger voice.
With feed supplies running tight, producers can tap into some creative options, according to University of Pennsylvania Veterinarian and Professor Dr. Joe Bender.
Lewis Williamson with HTS Commodities shares an update on post-WASDE grain movement, with corn leading export momentum, soybeans steady, and wheat and sorghum continuing to move selectively.
The new WOTUS proposal narrows federal jurisdiction, restores key agricultural exclusions, and gives farmers clearer permitting rules after years of regulatory uncertainty.
UMN Extension’s Emily Krekelberg outlines today’s top farm stressors, key signs of mental health distress in rural communities, and the resources available for support.
Agriculture Shows
Special 3-part series tells the story of the Claas family’s legacy, which changed agriculture forever.
From soil to harvest. Top Crop is an all-new series about four of the best farmers in the world—Dan Luepkes, of Oregan, Illinois; Cory Atley, of Cedarville, Ohio; Shelby Fite, of Jackson Center, Ohio; Russell Hedrick, of Hickory, North Carolina—reveals what it takes for them to make a profitable crop. It all starts with good soil, patience, and a strong planter setup.
Champions of Rural America is a half-hour dive into the legislative priorities for Rural America. Join us as we interview members of the Congressional Western Caucus to learn about efforts in Washington to preserve agriculture and tackles the most important topics in the ag industry on Champions of Rural America!
Featuring members of Congress, federal and state officials, ag and food leaders, farmers, and roundtable panelists for debates and discussions.