Study: Farmers could one day grow “super-pangenome” watermelons

Researchers at the Boyce Thompson Institute have constructed the perfect watermelon—returning “lost” genes from the domesticated fruit’s wild relatives that improve both taste and resilience during the growing process.

watermelon_AdobeStock_7425002.png

Adobe Stock

Could farmers soon be growing and harvesting the perfect watermelon? It is no secret — delivering juicy, delicious “summer smiles” is no easy feat, and producing perfect watermelons from season to season is exceptionally challenging. According to a recent study published in the Plant Biotechnology Journal, watermelon growers may soon get a huge assist from science.

Researchers at the Boyce Thompson Institute recently constructed what they call a “super-pangenome” watermelon—combining the genome of the domesticated fruit and returning “lost” genes from its wild relatives. The researchers say the combination improves the fruit’s taste as well as its resilience during the growing process.

“The super-pangenome provides a valuable genetic toolkit for breeders and researchers to improve cultivated watermelon,” said Professor Zhangjun Fei, the study’s lead author. “By understanding the genetic makeup and evolutionary patterns of watermelons, we can develop varieties with enhanced yield, increased disease resistance, and improved adaptability. Our findings [...] also present significant implications for breeding and disease resistance.”

Genes from wild watermelon varieties that researchers were able to isolate within the super-pangenome control things like sweetness, flesh color, and rind thickness that were lost over centuries of domestication. One particularly exciting discovery was their ability to isolate the “tandem duplication of the sugar transporter gene ClTST2 that enhances sugar accumulation and fruit sweetness in cultivated watermelon.”

To create this super-pangenome watermelon, scientists referenced genes from 547 watermelon types spanning four species—cultivated watermelon (Citrullus lanatus), and its wild relatives: C. mucosospermus, C. amarus, and C. colocynthis.

“These beneficial genes could be reintroduced into modern cultivars to breed more resilient watermelon varieties,” Fei said. “Our findings not only provide insights into the evolutionary journey of watermelons but also present significant implications for breeding and disease resistance.”

The Boyce Thompson Institute study was supported by grants from the USDA National Institute of Food and Agriculture Specialty Crop Research Initiative and the U.S. National Science Foundation.

To read the full study, click the image below:

Behind the Rind: New Genomic Insights into Watermelon Evolution, Quality, and Resilience
Related Stories
Retail pricing confirms tight cattle supplies and supports continued leverage for producers, reinforcing the need for disciplined risk management.
Long-term demand uncertainty is reshaping specialty crop strategies as producers adapt to fewer, older consumers.
Seasonal boxed beef softness does not change the tight-supply outlook — leverage remains closer to the farm gate heading into 2026.
Trade uncertainty—especially regarding soybeans—continues to weigh on future outlooks, even as farm finances and land values remain resilient.
Strong export demand supports feed grain prices, but drought risk and seasonal patterns favor disciplined early-year marketing.
Last year was a busy year for pesticide litigation in the United States. At No. 10, it kicks off RFD-TV Legal Expert Roger McEowen’s list of the “Top 10” Agricultural Law and Tax Developments of 2025.
On a spreadsheet, it looks like the ultimate way to harvest extra profit. But in the eyes of the IRS—as RFD-TV Farm Legal & Tax Expert Roger McEowen explains—this “tax-free” bank can quickly turn into a field full of weeds.
Preserving equity through active risk management remains critical in a volatile, supply-driven market.

Marion is a digital content manager for RFD News and FarmHER + RanchHER. She started working for Rural Media Group in May 2022, bringing a decade of digital experience in broadcast media and some cooking experience to the team.

LATEST STORIES BY THIS AUTHOR:

CLAAS Senior Vice President for the Americas Region Eric Raby joined us to preview the new docuseries “CLAAS: Made for More,” premiering tonight at 9 PM ET only on RFD-TV.
Dairy farmer and Discover Ag co-host Tara Vander Dussen joined us to discuss the Whole Milk for Healthy Kids Act, her experience at the signing, and what’s next for her family and farm.
The Farm Bureau is making an urgent call to Congress for more farm support. Colton Lacina with Farmers National Company joined us to discuss farmland values and how market dynamics for the year ahead reflect stabilization rather than collapse.
Analysts say a Supreme Court decision on tariffs could reshape protein markets, strain U.S.-China trade, and force farmers to rethink global demand strategies.
Wayne Cockrell with the Texas and Southwestern Cattle Raisers Association joined us to discuss preparedness, producer awareness, and the industry’s response to New World screwworm concerns.
President Donald Trump speaks at the World Economic Forum in Davos, addressing SNAP spending, tariff threats against Europe, market reactions, and the upcoming USMCA review.
Agriculture Shows
Special 3-part series tells the story of the Claas family’s legacy, which changed agriculture forever.
From soil to harvest. Top Crop is an all-new series about four of the best farmers in the world—Dan Luepkes, of Oregan, Illinois; Cory Atley, of Cedarville, Ohio; Shelby Fite, of Jackson Center, Ohio; Russell Hedrick, of Hickory, North Carolina—reveals what it takes for them to make a profitable crop. It all starts with good soil, patience, and a strong planter setup.
Champions of Rural America is a half-hour dive into the legislative priorities for Rural America. Join us as we interview members of the Congressional Western Caucus to learn about efforts in Washington to preserve agriculture and tackles the most important topics in the ag industry on Champions of Rural America!
Featuring members of Congress, federal and state officials, ag and food leaders, farmers, and roundtable panelists for debates and discussions.