Study: Farmers could one day grow “super-pangenome” watermelons

Researchers at the Boyce Thompson Institute have constructed the perfect watermelon—returning “lost” genes from the domesticated fruit’s wild relatives that improve both taste and resilience during the growing process.

watermelon_AdobeStock_7425002.png

Adobe Stock

Could farmers soon be growing and harvesting the perfect watermelon? It is no secret — delivering juicy, delicious “summer smiles” is no easy feat, and producing perfect watermelons from season to season is exceptionally challenging. According to a recent study published in the Plant Biotechnology Journal, watermelon growers may soon get a huge assist from science.

Researchers at the Boyce Thompson Institute recently constructed what they call a “super-pangenome” watermelon—combining the genome of the domesticated fruit and returning “lost” genes from its wild relatives. The researchers say the combination improves the fruit’s taste as well as its resilience during the growing process.

“The super-pangenome provides a valuable genetic toolkit for breeders and researchers to improve cultivated watermelon,” said Professor Zhangjun Fei, the study’s lead author. “By understanding the genetic makeup and evolutionary patterns of watermelons, we can develop varieties with enhanced yield, increased disease resistance, and improved adaptability. Our findings [...] also present significant implications for breeding and disease resistance.”

Genes from wild watermelon varieties that researchers were able to isolate within the super-pangenome control things like sweetness, flesh color, and rind thickness that were lost over centuries of domestication. One particularly exciting discovery was their ability to isolate the “tandem duplication of the sugar transporter gene ClTST2 that enhances sugar accumulation and fruit sweetness in cultivated watermelon.”

To create this super-pangenome watermelon, scientists referenced genes from 547 watermelon types spanning four species—cultivated watermelon (Citrullus lanatus), and its wild relatives: C. mucosospermus, C. amarus, and C. colocynthis.

“These beneficial genes could be reintroduced into modern cultivars to breed more resilient watermelon varieties,” Fei said. “Our findings not only provide insights into the evolutionary journey of watermelons but also present significant implications for breeding and disease resistance.”

The Boyce Thompson Institute study was supported by grants from the USDA National Institute of Food and Agriculture Specialty Crop Research Initiative and the U.S. National Science Foundation.

To read the full study, click the image below:

Behind the Rind: New Genomic Insights into Watermelon Evolution, Quality, and Resilience
Related Stories
Jeff Johnston with CoBank’s Knowledge Exchange explains the growing role of Rural America in supporting the nation’s digital infrastructure.
Cattle markets are watching the Cattle-on-Feed Report for signs of tighter supplies, while USMEF warns limited China access is cutting producer profits.
A new maritime biofuels coalition aims to position ocean shipping as a significant growth market for U.S. crops and waste-derived fuels.
Larger operations maintain cost advantages, while softer equipment sales suggest producers are pacing machinery upgrades amid tighter margins.
Corn and wheat exports remain supportive, but weaker soybean demand — especially from China — continues to pressure oilseed markets.
Tim and Sharyn Abbott of the Music City Celebration Sale recap the weekend’s premier auction, which drew top dairy breeders and buyers to Nashville again this year from across North America.
Fertilizer markets face uncertainty after President Trump raised the possibility of tariffs on Canadian imports, with analysts warning of supply and pricing risks. Josh Linville with StoneX provides a fertilizer industry outlook.
Regional differences indicate that family ownership is universal, but farm structure and commodity mix determine the extent to which these operations drive agricultural output.
A new study found that retaining the EPA’s half-RIN credit protects soybean demand, farm income, and crushing-sector strength while preserving biofuel market flexibility.

Marion is a digital content manager for RFD-TV and The Cowboy Channel. She started working for Rural Media Group in May 2022, adding a decade of experience in the digital side of broadcast media and some cooking experience to the team.

LATEST STORIES BY THIS AUTHOR:

Listen to Alex’s Dirt Diaries episode today on all podcast platforms or tune into Rural Radio SiriusXM Channel 147 to listen, weekends at 5 a.m. and 4 p.m. ET.
Waiting could risk leaving next year’s crop unprotected.
Michigan corn farmer and NCGA Vice President-Elect Matt Frostic will lead the task force. He joined us on Thursday to share his insights on the escalating corn crisis.
Speaking about his administration’s tariff strategy, Trump acknowledged that producers could face financial strain in the short term but promised stopgap support.
As input costs continue to rise, diesel prices have held steady in recent weeks, according to energy analysts at GasBuddy.
U.S. soybean farmers are growing increasingly frustrated by Argentina’s gains in Chinese grain contracts and Trump’s pledge of economic support for the South American ally.
Agriculture Shows
From soil to harvest. Top Crop is an all-new series about four of the best farmers in the world—Dan Luepkes, of Oregan, Illinois; Cory Atley, of Cedarville, Ohio; Shelby Fite, of Jackson Center, Ohio; Russell Hedrick, of Hickory, North Carolina—reveals what it takes for them to make a profitable crop. It all starts with good soil, patience, and a strong planter setup.
Champions of Rural America is a half-hour dive into the legislative priorities for Rural America. Join us as we interview members of the Congressional Western Caucus to learn about efforts in Washington to preserve agriculture and tackles the most important topics in the ag industry on Champions of Rural America!
Featuring members of Congress, federal and state officials, ag and food leaders, farmers, and roundtable panelists for debates and discussions.
The goal of “Where the Food Comes From” is as simple as its name implies — host Chip Carter takes you along on the journey of where our food comes from — and we don’t just mean to the supermarket (though that’s part of the big picture!). But beyond where it comes from, how it gets there, and all the links in the chain that make that happen.
Join markets specialist Scott Shellady, better known as the Cow Guy, as he covers the market-close, breaking down headlines that drive the commodities and equities markets with commentary from respected industry heavyweights.