Study: Sewage, not fertilizer, largely causing dangerous nitrogen surge in Florida’s Indian River Lagoon

Researchers at Florida Atlantic University’s Harbor Branch Oceanographic Institute found human sewage, not fertilizer, is mainly responsible for dangerous nitrogen levels in Florida’s Indian River Lagoon.

According to a new study by Florida Atlantic University’s Harbor Branch Oceanographic Institute, fertilizer use was not to blame for the current environmental conditions in Florida’s Indian River Lagoon.

The Indian River Lagoon is located in Sebastian, Florida, on the Central-Atlantic Coast; and comprises three smaller lagoons: The Indian Lagoon, Banana River, and Mosquito River.

For decades, water managers, policymakers and environmental activists have implicated fertilizer use as the primary contributing source responsible for about 71 percent of these impairments in the lagoon — issues ranging from catastrophic seagrass losses, fish kills, unusual marine mammal deaths (including manatees), and recurring harmful algal blooms and brown tides, the Indian River Lagoon is environmentally distressed.

That is why, over the last five years, stringent fertilizer bans were enacted along the 156-mile coast of the Lagoon during wet seasons to decrease nutrient inputs from urban and agricultural land uses and thereby lessen maximum daily loads for the lagoon.

muck-removal-newsdesk.jpg

Photo depicts muck removal, macroalgal blooms and brown tide in the Indian Lagoon near Turkey Creek, where approximately 27,000 septic systems drain into the lagoon. (Credit: Brian Lapointe, FAU Harbor Branch)

However, according to the FAU study, published in the journal Marine Pollution Bulletin, agricultural fertilizers were more likely responsible for about 21 percent of the nitrogen load in the Lagoon, and while the bans were well-meaning and have been effective to some extent, it has not been enough to improve the problems. In fact, in the last five years, algae blooms have only worsened in the threatened waterway — and led to “unprecedented” seagrass die-offs and starving manatees.

“Our comparative pre- versus post-ban nutrient data indicate that the wet season fertilizer blackouts were not as effective as hoped,” said Brian Lapointe, Ph.D., senior author and a research professor at FAU Harbor Branch. “Our findings also suggest that the increasing concentrations of dissolved inorganic nitrogen and phosphorus observed in some segments of the lagoon following five years of fertilizer bans would support the worsening trend of algal blooms.”

As scientists compared samples taken before- and post-fertilizer blackouts, as well as compared with other nitrogen-threatened waterways, they determined that more likely, human sewage released from septic systems during wet seasons is the cause of an estimated 79 percent of the nutrient load in the Lagoon.

“The deteriorating conditions in the Indian River Lagoon demonstrate the urgent need for more comprehensive mitigation actions as fertilizer ordinances are not likely to be a standalone solution,” said Rachel Brewton, corresponding author and a research scientist at FAU Harbor Branch. “Our data indicate a primary role of human waste influence in the lagoon, which suggests that current management actions have been insufficient at mitigating environmental pollution.”

Environmentalists hope that as quickly as these fertilizer blackouts were accepted as a solution, so too, will the mitigation of human waste runoff into these protected waterways be championed and enacted.

“The initial overestimation of nitrogen contributions from residential fertilizer applications led to broad public support and the passage of numerous fertilizer ordinances along the Indian River Lagoon during our study period,” said Lapointe. “Now, it would be prudent to prioritize reducing human waste nutrient inputs into the lagoon, prior to mitigating the impacts of internal nutrient sources, when possible.”

Related Stories
Long-term demand uncertainty is reshaping specialty crop strategies as producers adapt to fewer, older consumers.
Seasonal boxed beef softness does not change the tight-supply outlook — leverage remains closer to the farm gate heading into 2026.
Trade uncertainty—especially regarding soybeans—continues to weigh on future outlooks, even as farm finances and land values remain resilient.
Strong export demand supports feed grain prices, but drought risk and seasonal patterns favor disciplined early-year marketing.
Last year was a busy year for pesticide litigation in the United States. At No. 10, it kicks off RFD-TV Legal Expert Roger McEowen’s list of the “Top 10” Agricultural Law and Tax Developments of 2025.
On a spreadsheet, it looks like the ultimate way to harvest extra profit. But in the eyes of the IRS—as RFD-TV Farm Legal & Tax Expert Roger McEowen explains—this “tax-free” bank can quickly turn into a field full of weeds.
Preserving equity through active risk management remains critical in a volatile, supply-driven market.
USDA data indicates that 13.7 percent of U.S. households experienced food insecurity in 2024, the highest rate since 2014, even as most households remained food secure.

Marion is a digital content manager for RFD News and FarmHER + RanchHER. She started working for Rural Media Group in May 2022, bringing a decade of digital experience in broadcast media and some cooking experience to the team.

LATEST STORIES BY THIS AUTHOR:

Matt Brockman, communications director for the Fort Worth Stock Show & Rodeo, joined us to share a preview of the upcoming event.
RealAg Radio host Shaun Haney discusses the latest developments in the Supreme Court, trade tariffs, and the future of the USMCA under President Donald Trump.
Alex Templeton works alongside her dad, sharing her life through social media and her blog Ag Talk with Alex.
Brent Graves, auctioneer and mentor, shares his journey supporting youth in agriculture, livestock competitions, and how he is turning junior livestock auctions into a classroom for youth in agriculture.
China’s beef policy risk stems from domestic volatility, making export demand inherently unstable. Jake Charleston with Specialty Risk Insurance offers his perspective on cattle markets, risk management, and producer sentiment.
USDA flash corn sales, Cattle on Feed and Inventory reports, and beef packer antitrust concerns dominate January agricultural market news.
Agriculture Shows
Special 3-part series tells the story of the Claas family’s legacy, which changed agriculture forever.
From soil to harvest. Top Crop is an all-new series about four of the best farmers in the world—Dan Luepkes, of Oregan, Illinois; Cory Atley, of Cedarville, Ohio; Shelby Fite, of Jackson Center, Ohio; Russell Hedrick, of Hickory, North Carolina—reveals what it takes for them to make a profitable crop. It all starts with good soil, patience, and a strong planter setup.
Champions of Rural America is a half-hour dive into the legislative priorities for Rural America. Join us as we interview members of the Congressional Western Caucus to learn about efforts in Washington to preserve agriculture and tackles the most important topics in the ag industry on Champions of Rural America!
Featuring members of Congress, federal and state officials, ag and food leaders, farmers, and roundtable panelists for debates and discussions.