Study: Sewage, not fertilizer, largely causing dangerous nitrogen surge in Florida’s Indian River Lagoon

Researchers at Florida Atlantic University’s Harbor Branch Oceanographic Institute found human sewage, not fertilizer, is mainly responsible for dangerous nitrogen levels in Florida’s Indian River Lagoon.

According to a new study by Florida Atlantic University’s Harbor Branch Oceanographic Institute, fertilizer use was not to blame for the current environmental conditions in Florida’s Indian River Lagoon.

The Indian River Lagoon is located in Sebastian, Florida, on the Central-Atlantic Coast; and comprises three smaller lagoons: The Indian Lagoon, Banana River, and Mosquito River.

For decades, water managers, policymakers and environmental activists have implicated fertilizer use as the primary contributing source responsible for about 71 percent of these impairments in the lagoon — issues ranging from catastrophic seagrass losses, fish kills, unusual marine mammal deaths (including manatees), and recurring harmful algal blooms and brown tides, the Indian River Lagoon is environmentally distressed.

That is why, over the last five years, stringent fertilizer bans were enacted along the 156-mile coast of the Lagoon during wet seasons to decrease nutrient inputs from urban and agricultural land uses and thereby lessen maximum daily loads for the lagoon.

muck-removal-newsdesk.jpg

Photo depicts muck removal, macroalgal blooms and brown tide in the Indian Lagoon near Turkey Creek, where approximately 27,000 septic systems drain into the lagoon. (Credit: Brian Lapointe, FAU Harbor Branch)

However, according to the FAU study, published in the journal Marine Pollution Bulletin, agricultural fertilizers were more likely responsible for about 21 percent of the nitrogen load in the Lagoon, and while the bans were well-meaning and have been effective to some extent, it has not been enough to improve the problems. In fact, in the last five years, algae blooms have only worsened in the threatened waterway — and led to “unprecedented” seagrass die-offs and starving manatees.

“Our comparative pre- versus post-ban nutrient data indicate that the wet season fertilizer blackouts were not as effective as hoped,” said Brian Lapointe, Ph.D., senior author and a research professor at FAU Harbor Branch. “Our findings also suggest that the increasing concentrations of dissolved inorganic nitrogen and phosphorus observed in some segments of the lagoon following five years of fertilizer bans would support the worsening trend of algal blooms.”

As scientists compared samples taken before- and post-fertilizer blackouts, as well as compared with other nitrogen-threatened waterways, they determined that more likely, human sewage released from septic systems during wet seasons is the cause of an estimated 79 percent of the nutrient load in the Lagoon.

“The deteriorating conditions in the Indian River Lagoon demonstrate the urgent need for more comprehensive mitigation actions as fertilizer ordinances are not likely to be a standalone solution,” said Rachel Brewton, corresponding author and a research scientist at FAU Harbor Branch. “Our data indicate a primary role of human waste influence in the lagoon, which suggests that current management actions have been insufficient at mitigating environmental pollution.”

Environmentalists hope that as quickly as these fertilizer blackouts were accepted as a solution, so too, will the mitigation of human waste runoff into these protected waterways be championed and enacted.

“The initial overestimation of nitrogen contributions from residential fertilizer applications led to broad public support and the passage of numerous fertilizer ordinances along the Indian River Lagoon during our study period,” said Lapointe. “Now, it would be prudent to prioritize reducing human waste nutrient inputs into the lagoon, prior to mitigating the impacts of internal nutrient sources, when possible.”

Related Stories
Expanding chicken supplies are likely to keep prices under pressure in early 2026 despite steady demand growth.
Prompt removal of Christmas trees and careful handling of decorations reduce winter fire risk during an already high-demand season for emergency services.
Reduced winter placements indicate tighter fed cattle supplies and greater leverage during peak-demand months.
AFBF Economist Faith Parum provides analysis and perspective on the Farmer Bridge Assistance Program—what commodity growers should know and potential remedies for producers facing crop losses where that aid falls short.
Federal nutrition policy is signaling a stronger demand for whole foods produced by U.S. farmers and ranchers. Consumer-facing guidance favors animal protein, but institutional demand may change little under existing saturated fat limits.
Farmer Bridge payments are being used primarily to reduce debt and protect cash flow, not drive new spending. Curt Blades with the Association of Equipment Manufacturers joined us to provide insight into the ag equipment market and the factors influencing sales.
Rail strength is helping stabilize grain movement, but river and export slowdowns continue to limit overall logistics momentum.
Retail pricing confirms tight cattle supplies and supports continued leverage for producers, reinforcing the need for disciplined risk management.

Marion is a digital content manager for RFD News and FarmHER + RanchHER. She started working for Rural Media Group in May 2022, bringing a decade of digital experience in broadcast media and some cooking experience to the team.

LATEST STORIES BY THIS AUTHOR:

Congressman Dusty Johnson of South Dakota joined us to discuss key ag policy developments and his outlook for agriculture in 2026.
House Agriculture Committee Democrats are calling for action on the Farm and Family Relief Act, warning that proposed SNAP cost shifts to states could reduce food assistance for low-income families amid ongoing tariffs and trade disruptions that continue to strain U.S. farmers.
Alissa White with American Farmland Trust joined us to provide insight into climate resilience efforts and strategies to help farmers manage weather-related risks.
University of Nebraska President Dr. Jeffrey Gold joined us to share practical health and safety guidance for managing respiratory and skin health during the winter season.
Roger McEowen with the Washburn University School of Law joined us to provide legal analysis on key cases shaping the agricultural landscape heading into the year ahead.
NASDA declared 2026 the International Year of the Woman Farmer. President Amanda Beal joins us to share NASDA’s new hub, which highlights the impact of women in agriculture worldwide.
Agriculture Shows
Special 3-part series tells the story of the Claas family’s legacy, which changed agriculture forever.
From soil to harvest. Top Crop is an all-new series about four of the best farmers in the world—Dan Luepkes, of Oregan, Illinois; Cory Atley, of Cedarville, Ohio; Shelby Fite, of Jackson Center, Ohio; Russell Hedrick, of Hickory, North Carolina—reveals what it takes for them to make a profitable crop. It all starts with good soil, patience, and a strong planter setup.
Champions of Rural America is a half-hour dive into the legislative priorities for Rural America. Join us as we interview members of the Congressional Western Caucus to learn about efforts in Washington to preserve agriculture and tackles the most important topics in the ag industry on Champions of Rural America!
Featuring members of Congress, federal and state officials, ag and food leaders, farmers, and roundtable panelists for debates and discussions.