Study: Sewage, not fertilizer, largely causing dangerous nitrogen surge in Florida’s Indian River Lagoon

Researchers at Florida Atlantic University’s Harbor Branch Oceanographic Institute found human sewage, not fertilizer, is mainly responsible for dangerous nitrogen levels in Florida’s Indian River Lagoon.

According to a new study by Florida Atlantic University’s Harbor Branch Oceanographic Institute, fertilizer use was not to blame for the current environmental conditions in Florida’s Indian River Lagoon.

The Indian River Lagoon is located in Sebastian, Florida, on the Central-Atlantic Coast; and comprises three smaller lagoons: The Indian Lagoon, Banana River, and Mosquito River.

For decades, water managers, policymakers and environmental activists have implicated fertilizer use as the primary contributing source responsible for about 71 percent of these impairments in the lagoon — issues ranging from catastrophic seagrass losses, fish kills, unusual marine mammal deaths (including manatees), and recurring harmful algal blooms and brown tides, the Indian River Lagoon is environmentally distressed.

That is why, over the last five years, stringent fertilizer bans were enacted along the 156-mile coast of the Lagoon during wet seasons to decrease nutrient inputs from urban and agricultural land uses and thereby lessen maximum daily loads for the lagoon.

muck-removal-newsdesk.jpg

Photo depicts muck removal, macroalgal blooms and brown tide in the Indian Lagoon near Turkey Creek, where approximately 27,000 septic systems drain into the lagoon. (Credit: Brian Lapointe, FAU Harbor Branch)

However, according to the FAU study, published in the journal Marine Pollution Bulletin, agricultural fertilizers were more likely responsible for about 21 percent of the nitrogen load in the Lagoon, and while the bans were well-meaning and have been effective to some extent, it has not been enough to improve the problems. In fact, in the last five years, algae blooms have only worsened in the threatened waterway — and led to “unprecedented” seagrass die-offs and starving manatees.

“Our comparative pre- versus post-ban nutrient data indicate that the wet season fertilizer blackouts were not as effective as hoped,” said Brian Lapointe, Ph.D., senior author and a research professor at FAU Harbor Branch. “Our findings also suggest that the increasing concentrations of dissolved inorganic nitrogen and phosphorus observed in some segments of the lagoon following five years of fertilizer bans would support the worsening trend of algal blooms.”

As scientists compared samples taken before- and post-fertilizer blackouts, as well as compared with other nitrogen-threatened waterways, they determined that more likely, human sewage released from septic systems during wet seasons is the cause of an estimated 79 percent of the nutrient load in the Lagoon.

“The deteriorating conditions in the Indian River Lagoon demonstrate the urgent need for more comprehensive mitigation actions as fertilizer ordinances are not likely to be a standalone solution,” said Rachel Brewton, corresponding author and a research scientist at FAU Harbor Branch. “Our data indicate a primary role of human waste influence in the lagoon, which suggests that current management actions have been insufficient at mitigating environmental pollution.”

Environmentalists hope that as quickly as these fertilizer blackouts were accepted as a solution, so too, will the mitigation of human waste runoff into these protected waterways be championed and enacted.

“The initial overestimation of nitrogen contributions from residential fertilizer applications led to broad public support and the passage of numerous fertilizer ordinances along the Indian River Lagoon during our study period,” said Lapointe. “Now, it would be prudent to prioritize reducing human waste nutrient inputs into the lagoon, prior to mitigating the impacts of internal nutrient sources, when possible.”

Related Stories
Low farmer shares reflect deep consolidation across the food chain, keeping producer returns thin even as retail food prices remain high.
Tyson’s Nebraska plant closure and falling Cattle on Feed numbers send cattle markets tumbling. Analysts warn of tighter supplies, weak margins, and rising global competition.
A regional snapshot of harvest pace, crop conditions, logistics, and livestock economics across U.S. agriculture, prepared by RFD-TV Markets Specialist Tony St. James, for the week of Monday, November 24, 2025.
Farmers with unpaid Hansen-Mueller grain should verify delivery records immediately and file indemnity claims quickly, as coverage rules differ sharply by state.
Farm legal expert Roger McEowen reviews the history of the Waters of the United States (WOTUS) rule and outlines how shifting definitions across multiple administrations have created regulatory confusion for landowners.

Marion is a digital content manager for RFD News and FarmHER + RanchHER. She started working for Rural Media Group in May 2022, bringing a decade of digital experience in broadcast media and some cooking experience to the team.

LATEST STORIES BY THIS AUTHOR:

A booming butterfat market is good for some dairy products but threatens efficiency and margins for cheesemakers unless protein levels catch up
Duane Simpson, CEO of the National Council of Farmer Cooperatives (NCFC), joined us in Monday’s Market Day Report to share his perspective on the USDA’s plan and potential impact on producers.
While treatable with a vaccine, anthrax is a dangerous threat to cattle herd health if not identified and treated immediately.
UC Davis Professor and Extension Specialist Dr. Frank Mitloehner joined us on Friday’s Market Day Report to preview the festivities and share why this event has become such a special tradition for the ag community.
Beal joined us on Friday’s Market Day Report to discuss her election to NASDA’s presidency, challenges facing American agriculture, and her background as a Mainer and dairy farmer.
Agriculture Shows
Hosted by Scott “The Cow Guy” Shellady and RFD News Markets Specialist Tony St. James, Commodity Talk delivers expert insight into the day’s ag commodity markets just before the CME opens. Only on RFD-TV and Rural Radio SiriusXM Channel 147.
A look at the news, weather and commodities headlines that drove agriculture markets in the past week.
Everything profits from prairie. Soil, air, water — and all kinds of life! Learn how you can improve your land with prairie restoration, cover crops and prairie strips, while growing your bottom line.
Special 3-part series tells the story of the Claas family’s legacy, which changed agriculture forever.