Study: Sewage, not fertilizer, largely causing dangerous nitrogen surge in Florida’s Indian River Lagoon

Researchers at Florida Atlantic University’s Harbor Branch Oceanographic Institute found human sewage, not fertilizer, is mainly responsible for dangerous nitrogen levels in Florida’s Indian River Lagoon.

According to a new study by Florida Atlantic University’s Harbor Branch Oceanographic Institute, fertilizer use was not to blame for the current environmental conditions in Florida’s Indian River Lagoon.

The Indian River Lagoon is located in Sebastian, Florida, on the Central-Atlantic Coast; and comprises three smaller lagoons: The Indian Lagoon, Banana River, and Mosquito River.

For decades, water managers, policymakers and environmental activists have implicated fertilizer use as the primary contributing source responsible for about 71 percent of these impairments in the lagoon — issues ranging from catastrophic seagrass losses, fish kills, unusual marine mammal deaths (including manatees), and recurring harmful algal blooms and brown tides, the Indian River Lagoon is environmentally distressed.

That is why, over the last five years, stringent fertilizer bans were enacted along the 156-mile coast of the Lagoon during wet seasons to decrease nutrient inputs from urban and agricultural land uses and thereby lessen maximum daily loads for the lagoon.

muck-removal-newsdesk.jpg

Photo depicts muck removal, macroalgal blooms and brown tide in the Indian Lagoon near Turkey Creek, where approximately 27,000 septic systems drain into the lagoon. (Credit: Brian Lapointe, FAU Harbor Branch)

However, according to the FAU study, published in the journal Marine Pollution Bulletin, agricultural fertilizers were more likely responsible for about 21 percent of the nitrogen load in the Lagoon, and while the bans were well-meaning and have been effective to some extent, it has not been enough to improve the problems. In fact, in the last five years, algae blooms have only worsened in the threatened waterway — and led to “unprecedented” seagrass die-offs and starving manatees.

“Our comparative pre- versus post-ban nutrient data indicate that the wet season fertilizer blackouts were not as effective as hoped,” said Brian Lapointe, Ph.D., senior author and a research professor at FAU Harbor Branch. “Our findings also suggest that the increasing concentrations of dissolved inorganic nitrogen and phosphorus observed in some segments of the lagoon following five years of fertilizer bans would support the worsening trend of algal blooms.”

As scientists compared samples taken before- and post-fertilizer blackouts, as well as compared with other nitrogen-threatened waterways, they determined that more likely, human sewage released from septic systems during wet seasons is the cause of an estimated 79 percent of the nutrient load in the Lagoon.

“The deteriorating conditions in the Indian River Lagoon demonstrate the urgent need for more comprehensive mitigation actions as fertilizer ordinances are not likely to be a standalone solution,” said Rachel Brewton, corresponding author and a research scientist at FAU Harbor Branch. “Our data indicate a primary role of human waste influence in the lagoon, which suggests that current management actions have been insufficient at mitigating environmental pollution.”

Environmentalists hope that as quickly as these fertilizer blackouts were accepted as a solution, so too, will the mitigation of human waste runoff into these protected waterways be championed and enacted.

“The initial overestimation of nitrogen contributions from residential fertilizer applications led to broad public support and the passage of numerous fertilizer ordinances along the Indian River Lagoon during our study period,” said Lapointe. “Now, it would be prudent to prioritize reducing human waste nutrient inputs into the lagoon, prior to mitigating the impacts of internal nutrient sources, when possible.”

Related Stories
RFD NEWS correspondent Frank McCaffrey recently spoke with Dr. Mike Vickers, a South Texas rancher, who says illegal border crossings have dramatically declined in the last year.
New rule speeds leasing and permitting for federal oil and gas development
Texas Farm Bureau President Russell Boening joined us with the latest update on storm conditions and impacts across the state.
Mike Knotts with the Tennessee Electric Cooperative Association joined us with the latest on storm impacts, power restoration, and safety considerations following the ice storm.
Meat stocks rose seasonally but remain below last year overall, while tighter butter inventories could support dairy prices, and belly stocks warrant close watch for pork markets.
Year-round E15 remains on the table, but procedural caution and competing regional interests pushed action into a slower, negotiated path.
A mid-January winter storm delivered snow, ice, and extreme cold to a broad swath of the U.S., disrupting transportation, stressing livestock systems, and adding cost and complexity to winter farm operations as producers look toward spring.
Heavier weights and strong late-year slaughter supported December production, but lower annual totals highlight ongoing supply tightness heading into 2026.
Strong production and rising stocks may pressure ethanol margins unless demand or exports continue to improve.

Marion is a digital content manager for RFD News and FarmHER + RanchHER. She started working for Rural Media Group in May 2022, bringing a decade of digital experience in broadcast media and some cooking experience to the team.

LATEST STORIES BY THIS AUTHOR:

Strong White House backing supports ethanol demand, but timing now hinges on Congress resolving procedural — at the same time as they push toward a spending bill to avert another federal government shutdown.
Roger McEowen, with the Washburn School of Law, offers an in-depth look at two of the top legal issues of 202. Today, he walks through last year’s Waters of the United States (WOTUS) ruling and “lawfare.”
Lewis Williamson of HTS Commodities joined us with an update on the historic winter storm impacts and his outlook on today’s ag markets.
Marilyn Schlake with the UNL Department of Agricultural Economics joined us for a closer look at the evolving role of livestock sale barns.
Brooks York with AgriSompo joined us with his outlook on crop insurance and risk management following the recent winter storm that tore through most of the United States, including the Midwest.
USDA Rural Development Director for Kentucky, Travis Burton, joined us to discuss the Princeton facility (formerly Porter Road Meats), now backed by the USDA, and its role in expanding domestic meat processing capacity.
Agriculture Shows
Watch Rural Evening News to catch up on that day’s news surrounding agriculture and markets from across the world. Along with market news, our news staff will bring you news stories covering topics including auctions, cattle, farm equipment, ranch, real estate, and much more!
Every day, “Market Day Report” delivers “live” coverage of agri-business news, weather, and commodity market information from across the world. Our market coverage is constantly updated every half-hour, bringing you the latest on the markets.
Farm Monitor shines a light on Southeastern agriculture and is the only weekly news and information program dedicated to Georgia’s largest and most important industry: agriculture.
Check out FFA Today, a fun and fast-paced show featuring fascinating stories about amazing kids and unique agriculture industries.