Pre-published study links HPAI in dairy cattle to the mammary gland — not the respiratory system

Researchers in Denmark and St. Jude Hospital submitted a new study for peer review providing new insight into how High Path Avian Flu (HPAI) H5N1 in dairy cattle differs from avian cases.

WTFCF_S4E3_BTS_12_hickory-hill-milk_cow-on-milking-machine_1920x1080.jpg

A peek inside the robot milking machine.

A peek inside the robot milking machine. (Photo by Donna Sanders)

A new study regarding the recent cases of High-Path Avian Influenza (HPAI) H5N1 cases in dairy cattle from the University of Copenhagen, Statens Serum Institut Copenhagen, and St. Jude Children’s Research Hospital in Memphis, Tenn., has been submitted for pre-print peer review linking cases in dairy cattle to the mammary gland.

The study’s findings — which are now awaiting certification by a scientific journal through the peer review process — shocked the researchers involved, challenging the notion that HPAI H5N1 is transmitted in cattle through the respiratory system as it is known to do in commercial poultry and wild birds. Rather, they found the largest source of infection in the dairy cow’s mammary glands. The researchers say the unanswered questions posed by their findings concerning the unidentified transmission route of HPAI cattle to the mammary require further and immediate study.

What They Studied

This microbiology study gives new insights into how bovine cases differ from other HPAI cases in poultry, wild birds, and humans by comparing what sialic acid (SAs) receptors dairy and beef cattle share with humans, avians (chicken and wild birds), and ducks. They were able to survey the bovine anatomy of infected dairy cattle where those receptors are located and determine the viral infection levels in those organs.

Receptors are like doorways for viruses to enter our bodies. According to another study from the journal Viruses, SAs are one type of receptor that many viruses, including the flu and coronaviruses, use to get into our cells. When different animals have similar receptors that viruses can latch onto it makes it easier for viruses to jump between species and create new versions of themselves. This is why understanding which animals share these receptors is important for predicting and preventing the spread of diseases from animals to humans.

What They Found

In the process of studying the areas where cattle share SA receptors with humans, poultry, and water foul in a few HPAI-infected dairy cows and comparing them with uninfected beef cattle, researchers primarily found signs of the active virus in the mammary glands of dairy cows.

Specifically, the source of the H5N1 infections in dairy is in the alveoli, the upper part of the mammary glands of dairy cattle above the udder. Large concentrations of viral material shed into the raw milk produced by sick cows were also found. Interestingly, evidence of the virus was not detected in the teats themselves.

hpai h2n1 cattle diagram.png

Department of Veterinary and Animal Sciences, University of Copenhagen, Frederiksberg C, Denmark
Department of Virus and Microbiological Special Diagnostics, Statens Serum Institut, Copenhagen S, DenmarkDepartment of Host-Microbe Interactions, St. Jude Children’s Research Hospital, Memphis, TN, United States of America

While some traces of the virus were found deep in the respiratory tracts and lungs of the animal tests, the findings suggest those organs were not necessarily harboring infection. The virus was also not harbored in the brains of the cattle, where they are known to be more susceptible to viruses (think “mad cow”).

The clinical signs are dominated by sudden drop in milk production and mastitis, whereas only mild respiratory signs are observed and neurological symptoms that have often been described in other mammals infected by 2.3.4.4b viruses are absent6,8. A press release on April 25th from the US Food and Drug Administration showed that one out of five retail milk samples tested positive for HPAI H5N1 by quantitative polymerase chain reaction (qPCR). These results combined with reports of detection of extremely high levels of virus in milk from infected cows9 in contrast to previous studies suggesting bovine milk inactivates the hemagglutinin (HA) of influenza viruses5. Previous studies have also shown a productive infection can be induced by the installation of a human influenza A isolate into the mammary glands of cows and goats10,11. Together, these findings indicate that the pathogenesis of HPAI in cattle differs from other mammals, thus, there is an urgent need for a better understanding of the pathogenesis of IAV in cattle and the anatomic features linking virus replication to mammary tissue.
Charlotte Kristensen, Henrik E. Jensen, Ramona Trebbien, Richard J. Webby, Lars E. Larsen
The avian and human influenza A virus receptors sialic acid (SA)-α2,3 and SA-α2,6 are widely expressed in the bovine mammary gland bioRxiv 2024.05.03.592326; doi: https://doi.org/10.1101/2024.05.03.592326

These cases in dairy cattle differ wildly from the widespread commercial poultry cases of H5N1, which are known to transmit and infect via the respiratory system, as well as from other mammalian cases (like cats), where the H5N1 virus infects the brain.

What They Still Don’t Know

While confirming the presence of infection in the mammary glands of cattle, the findings do not explain how the virus enters and infects the mammary glands (or the “transmission route”), nor how the virus is being passed from animal to animal.

“The transmission route(s) and the pathogenesis of H5N1 in cows remain unclear, and it’s not known if the virus enters the mammary gland by an ascending infection or systemically by the blood supply. Interestingly, neither the human-, chicken-, nor the duck receptors were expressed in the ducts of the mammary gland, making an ascending mammary gland infection more challenging. It is not clear to which degree the HPAIV-infected cows develop viremia, however, even a very low degree of viremia may be adequate for the virus to enter the mammary gland and establish infection because the blood flow in the lactation period is ∼400 liter per hour26"

The study also does not fully explain how humans contract the virus. However, it does say clearly that humans share these same types of sialic acid receptors with dairy cattle — and we have them in large concentrations in our eyes. So the human symptoms of pink eye/conjunctivitis align with this science (and findings from other studies).

Researchers in this study emphasize an immediate need for additional studies to determine these critical factors in containing the spread among infected herds and minimizing transmission to humans in direct contact with cattle. Even more critically, these determinations might prevent dairy cattle from becoming a vessel for further mutation of the virus that could lead to widespread human-to-human transmission.

Here’s what they had to say:

“The co-expression of both human and avian receptors in the mammary glands indicate susceptibility for viruses of both swine/human and avian origin. This is worrying from a zoonotic perspective, because bovines may act as a mixing vessel for new IAVs with increased zoonotic potential. Additional research is very much needed to better understand the pathogenesis and epidemiology of IAV infections of cattle and other ruminants to elucidate if these species can act as a mixing vessel for new IAVs.”

What It Could Mean

While also not confirmed (or mentioned in this study), scientists such as T. (Thijs) Kuiken, Professor of Comparative Pathology at the Erasmus University Medical Center, suggest likely sources of cattle infection and transmission are milking machines and common sanitation practices at dairies that do not protect against transmission of viruses that could spread through liquids.

The raw milk left in the machines could later be identified as the transmission source simply because the machines are not cleaned between each animal. Rather, the cow’s udders are disinfected before and after touching the machine, and the machines and parlors are cleaned two to three times per day. Cows are cleaned instead of the liners because repeated chemical exposure to the milk machine liners causes the liners to deteriorate more rapidly. Therefore, the liners become harder to clean and need replacing more often.

Kuiken further hypothesizes that human infections could occur through eye contact with infected raw milk aspirated during the milking process or taking the equipment on and off each cow (since workers typically sit at or near-eye level with the bovine’s mammary). Another possibility is airborne water particles containing infected milk entering the eyes of humans when parlors are cleaned with high-pressure hoses.

Today, Texas authorities also confirmed the human who contracted the virus from dairy cattle was not wearing PPE at the estimated time of transmission, which resulted in an eye infection.

Read the Full Study (click print/save options and then select full text):

The avian and human influenza A virus receptors sialic acid (SA)-α2,3 and SA-α2,6 are widely expressed in the bovine mammary gland | bioRxiv

Related Stories
Protein-driven dairy growth is boosting beef supply potential, creating an opening to support rural jobs and ground beef availability.
New Resource Makes It Easier for People to Access Data on Rural Development funded Projects in Rural Communities
U.S. agriculture entered the week with mixed signals as weather, logistics, and markets shaped early-year decisions. Here is a regional breakdown of domestic crop and livestock production for the week of Monday, Jan. 19, 2026.
In a landmark ruling delivered in late 2025, the U.S. Supreme Court significantly narrowed the scope of the National Environmental Policy Act.
While short-term volatility remains a risk, softer ocean freight rates in 2026 could improve export margins.
Trade volatility and shifting export destinations increase marketing risk for producers heading into 2026.
RFD NEWS Correspondent Frank McCaffrey speaks with Texas’s Sen. Ted Cruz and Rep. Vicente Gonzalez about USMCA renegotiation and its impact on U.S.–Mexico agriculture trade.
Rising rural business confidence supports local ag economies, but taxes and labor shortages remain key constraints.
The Midland County Junior Livestock Show in West Texas features a competitive steer showcase highlighting top-quality cattle and the accomplishments of driven youth exhibitors.

Marion is a digital content manager for RFD News and FarmHER + RanchHER. She started working for Rural Media Group in May 2022, bringing a decade of digital experience in broadcast media and some cooking experience to the team.

LATEST STORIES BY THIS AUTHOR:

Wayne Cockrell with the Texas and Southwestern Cattle Raisers Association joined us to discuss preparedness, producer awareness, and the industry’s response to New World screwworm concerns.
President Donald Trump speaks at the World Economic Forum in Davos, addressing SNAP spending, tariff threats against Europe, market reactions, and the upcoming USMCA review.
From meatpacking settlements to landmark NEPA rulings, Roger McEowen outlines the top legal developments in 2025 that will shape agriculture in the years ahead.
Alan Bjerga with the National Milk Producers Federation joined us to review new policies and regulations supporting the dairy industry and what they mean for the year ahead.
Despite rising costs and growing food insecurity, meat demand remained strong in 2025 as higher-income consumers offset cutbacks elsewhere. Economists break down the K-shaped economy, upcoming USDA cattle reports, livestock production outlooks, and renewed debate over beef imports and country-of-origin labeling heading into 2026.
Corn growers are turning to ethanol, E15 expansion, and export markets to help absorb record supplies and stabilize prices. Farm leaders discuss low-carbon ethanol demand, flex-fuel vehicle challenges, input costs, and the role of USMCA as producers look for market relief in the year ahead.
Agriculture Shows
Special 3-part series tells the story of the Claas family’s legacy, which changed agriculture forever.
From soil to harvest. Top Crop is an all-new series about four of the best farmers in the world—Dan Luepkes, of Oregan, Illinois; Cory Atley, of Cedarville, Ohio; Shelby Fite, of Jackson Center, Ohio; Russell Hedrick, of Hickory, North Carolina—reveals what it takes for them to make a profitable crop. It all starts with good soil, patience, and a strong planter setup.
Champions of Rural America is a half-hour dive into the legislative priorities for Rural America. Join us as we interview members of the Congressional Western Caucus to learn about efforts in Washington to preserve agriculture and tackles the most important topics in the ag industry on Champions of Rural America!
Featuring members of Congress, federal and state officials, ag and food leaders, farmers, and roundtable panelists for debates and discussions.